See also: Publications in "high impact"* journals:2010 Gfeller D, Ernst A, Verschueren E, Vanhee P, Dar N, Serrano L, Sidhu SS, Bader GD, Kim PM. Uncovering Multiple Specificity in Protein Recognition Modules. PNAS (submitted) Costanzo M*,
Baryshnikova A*, Bellay J, Kim Y, Spear ED, Sevier SD, Ding H, Koh JLY,
Toufighi K, Mostafavi S, Prinz J, St. Onge R, Vandersluis B, Alizadeh S, Bahr
S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Li ZY, Liang W, Marback M, Paw
J, San Luis BJ, Shuteriqi E, Hin A, Tong AHY, van Dyk N, Wallace IM, Whitney
JA, Weirauch MT, Zhong G, Zhu H, Houry W, Brudno M, Ragibizadeh S, Papp B, Roth
FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris
QD , Kim PM, Kaiser CK, Myers CM, Andrews
B, Boone C. The Genetic Landscape of the Cell. Science (2010) Jan 22;327(5964):425-31 Lam HYK*, Mu
XJ*, Tanzer A, Stuetz A, Snyder M, Kim PM,
Korbel JO, Gerstein MB. BreakSeq: Mining a breakpoint library rapidly
identifies structural variants in personal genomes and reveals biases in their
formation. Nature Biotech. (2010) Jan;28(1):47-55. Epub 2009 Dec 27 Tonikian R*, Xin
X*, Toret CP*, Gfeller D, Landgraf C, Panni S, Paoluzi S, Castagnoli L,
Currell B, Seshagiri S, Yu H, Winsor B, Vidal M, Gerstein MB, Bader GD,
Volkmer R#, Cesareni G#, Drubin DG#, Kim PM#, Sidhu
SS#,Boone C#. Bayesian modeling of the yeast SH3 domain interactome
predicts spatiotemporal dynamics of endocytosis proteins.
PLoS Biol. 2009 Oct;7(10):e1000218 [#joint corresponding
author]] [PDF] Alexander RP, Kim PM, Emonet T, Gerstein MB. Understanding modularity in molecular networks requires dynamics. Science Signal. 2009 Jul 28;2(81):pe44 [PDF] 2008 Kim PM*, Lam HY*,
Urban AE, Korbel JO, Affourtit J, Grubert F, Chen X, Weissman S, Snyder
M, Gerstein MB. Analysis of copy number variants and segmental
duplications in the human genome: Evidence for a change in the process
of formation in recent evolutionary history. Genome Res. 2008 18(12):1865-74 [PDF] Korbel JO*, Kim PM*,
Chen X, Urban AE, Weissman S, Snyder M, Gerstein MB. The current
excitement about copy-number variation: how it relates to gene
duplications and protein families. Curr. Op. Struct. Biol. 18(3):366-74 [*joint first author] [PDF] Kim PM*, Sboner A*, Xia Y, Gerstein M. The role of disorder in interaction networks: a structural analysis. Nature Mol. Syst. Biol. 2008 4:179 [*joint first author] [PDF] 2007 Kim PM*, Korbel JO*, Gerstein MB. Positive selection at the protein network periphery: evaluation in terms of structural constraints and cellular context. PNAS 2007 104:20274-9 [*joint first author] [PDF] [Supplement Website] Korbel JO, Urban AE, Affourtit JP, Godwin B, Grubert F, Simons JF, Kim PM,
Palejev D, Carriero NJ, Du L, Taillon BE, Chen Z, Tanzer A, Saunders
AC, Chi J, Yang F, Carter NP, Hurles ME, Weissman SM, Harkins TT,
Gerstein MB, Egholm M, Snyder M. Paired-end mapping reveals extensive
structural variation in the human genome. Science 2007 318: 420-6 [PDF] Lu LJ, Sboner A, Huang YJ, Lu HX, Gianoulis TA, Yip KY, Kim PM, Montelione GT, Gerstein MB. Comparing classical pathways and modern networks: towards the development of an edge ontology. Trends in Biochemical Science 2007 32(7):320-31 [PDF] 2006 Kim PM, Lu LJ, Xia Y, Gerstein MB. Relating three-dimensional structures to protein networks provides evolutionary insights. Science 2006 314: 1938-41. [PDF] [Supplement Website] Comments in: Faculty of 1000: “Exceptional paper” pre 2006 Kim PM, Tidor B. Limitations of Quantitative Gene Regulation Models: A Case Study. Genome Res 2003 13: 2391-2395 [PDF] Kim PM, Tidor B. Subsystem Identification through Dimensionality Reduction of Large-scale Gene Expression Data. Genome Res 2003 13:1706-1718 [PDF] *High impact journals are loosely defined here as journals with an ISI impact factor higher than ten. |
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